Projects
My projects can mostly be found at Github.
My publications can be found at ResearchGate or Google scholar
VarSim
A framework for assessing alignment and variant calling accuracy in high-throughput genome sequencing through simulation or real data.
Download [Python/Java, Linux]
MetaSV
An accurate and integrative structural-variant caller for next generation sequencing
Download [Python, Linux]
fast-opt
A set of tools for multivariate density estimation and classification via the Optional Polya Tree. Includes approximate modes such as limited-lookahead OPT. Only for continuous or integer data, not categorical.
Download [C++, Mac/Linux-x64]
SeqAlto
A fast and accurate read aligner for resequencing applications.
Download [C++, Mac/Linux-x64]