My projects can mostly be found at Github.

My publications can be found at ResearchGate or Google scholar

VarSim

A framework for assessing alignment and variant calling accuracy in high-throughput genome sequencing through simulation or real data.

Download [Python/Java, Linux]

MetaSV

An accurate and integrative structural-variant caller for next generation sequencing

Download [Python, Linux]

fast-opt

A set of tools for multivariate density estimation and classification via the Optional Polya Tree. Includes approximate modes such as limited-lookahead OPT. Only for continuous or integer data, not categorical.

Download [C++, Mac/Linux-x64]

SeqAlto

A fast and accurate read aligner for resequencing applications.

Download [C++, Mac/Linux-x64]